sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
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The sonicLength package is used in this article and implements the methods described there: Estimating Abundances of Retroviral Insertion Sites from DNA Fragment Length Data Charles C. Berry; Nicolas A. Gillet; Anat Melamed; Niall Gormley; Charles R.M Bangham; Frederic Bushman Bioinformatics 2012; doi: 10.1093/bioinformatics/bts004